prismpyp metadata_nextpyp

Purpose

Copy .webp files of micrographs and power spectra (as estimated from CTFFIND4) from a nextPYP project into the metadata directory.

Additionally, this command parses .pkl files for pre-processing heuristics, including:

• CTF fit
• Estimated resolution
• Mean defocus

Usage

usage: prismpyp metadata_nextpyp [-h] 
                                 [--pkl-path PKL_PATH] 
                                 [--cryosparc-path CRYOSPARC_PATH] 
                                 [--output-dir OUTPUT_DIR]
                                 [--micrographs-list MICROGRAPHS_LIST]

Named Arguments

Argument	Description
--pkl-path	Path to the .pkl files
--cryosparc-path	Path to cryoSPARC Curate Exposure job exported .cs file (optional)
--output-dir	Output directory to save metadata and copied .webp files
--micrographs-list	Optional path to a text file containing a list of micrograph names (one per line) to filter the output