========= Changelog ========= **Legend**: :fa:`star,text-success` New feature, :fa:`plus-square,text-primary` Improvement, :fa:`bug,text-danger` Bug fix v0.6.2 (2/01/2024) ****************** :fa:`plus-square,text-primary` Expose additional parameters for frame alignment when using MotionCor3. :fa:`plus-square,text-primary` Remove unnecessary tabs from tomography refinement blocks. :fa:`plus-square,text-primary` Display slurm job launch information in the logs window. :fa:`plus-square,text-primary` Allow users to specify resources for the launch task on the Sessions side. :fa:`bug,text-danger` Fix bugs in parameter definitions when running movie frame alignment. :fa:`bug,text-danger` Fix bugs in the management of slurm's GRES options when submitting jobs to the scheduler. :fa:`bug,text-danger` Fix bug with movie drifts being deleted from the database when tilt-series were re-processed. v0.6.1 (1/30/2024) ****************** :fa:`star,text-success` Produce metadata for 3D visualization using `ArtiaX `_ for all refinement blocks. See the :doc:`user guide` for details. :fa:`star,text-success` Enable dose weighting and magnification correction options during frame alignment and averaging. :fa:`star,text-success` Allow specification of SLURM account for all job types to improve portability. :fa:`plus-square,text-primary` Expose full set of options when using MotionCor3 for frame alignment. :fa:`plus-square,text-primary` Allow specification of GPU resources using Gres option to allow selection of specific types of graphics cards, e.g., gpu:A100:1. :fa:`plus-square,text-primary` Add support for multiple date formats when reading metadata from .mdoc files. :fa:`plus-square,text-primary` Add support for .gain reference files and automatically resize corresponding .eer movies in data import blocks. :fa:`bug,text-danger` Fix issue when handling *.tif files that have a *.tiff extension. :fa:`bug,text-danger` Fix issue with multiprocessing library when using NFS mounts as local scratch. :fa:`bug,text-danger` Fix bug in single-particle sessions when using unbinned images for 2D classification. :fa:`bug,text-danger` Fix bug when picking particles using neural network-based approach on non-square tomograms. :fa:`bug,text-danger` Fix bug that prevented GPU jobs from running because the jobs were sent to the CPU queue. v0.6.0 (1/21/2024) ******************* :fa:`star,text-success` Allow use of `MotionCor3 `_ for movie frame alignment (GPU required). :fa:`star,text-success` Allow use of `AreTomo2 `_ for tilt-series alignment and reconstruction (GPU required). :fa:`star,text-success` Allow use of `Topaz `_ for 2D particle picking and 3D denoising (GPU recommended). :fa:`star,text-success` Produce .bild files after each refinement iteration for 3D visualization in Chimera/ChimeraX. :fa:`star,text-success` Automatic determination of CTF handedness during pre-processing of tilt-series. :fa:`plus-square,text-primary` Allow mix-and-match of IMOD and AreTomo2 for tilt-series alignment and tomogram reconstruction. :fa:`plus-square,text-primary` Automatically submit jobs to a GPU partition when running tasks that require GPU acceleration. :fa:`plus-square,text-primary` Display version number and amount of allocated memory at the beginning of every job. :fa:`plus-square,text-primary` Change default memory allocation for launch task to 4GB and add Resources tab to all data import blocks. :fa:`plus-square,text-primary` Simplify Resources tab by hiding unnecessary parameters depending on the block type. :fa:`plus-square,text-primary` Implement GPU resource management policies for slurm and standalone modes. :fa:`plus-square,text-primary` Show per-particle score distribution for all tomography refinement blocks and improve plot layout. :fa:`plus-square,text-primary` Allow use of slurm's GRES (generic resource scheduling) when submitting jobs to a cluster. :fa:`bug,text-danger` Fix OOM error when running constrained refinement using a single thread. :fa:`bug,text-danger` Fix error in particle filtering blocks when no particles are left in a given micrograph/tilt-series. :fa:`bug,text-danger` Fix issue in tomography sessions when .mdoc files are not used to import metadata. :fa:`bug,text-danger` Fix bug when exporting sub-tomograms for use in external programs. :fa:`bug,text-danger` Update systemd script to improve robustness during program restart. :fa:`bug,text-danger` Fix issues with cancellation of jobs in standalone mode. :fa:`bug,text-danger` Fix discrepancy with gain reference rotation/flips between data import and pre-processing blocks. v0.5.3 (11/25/2023) ******************* :fa:`star,text-success` Implement interactive measuring tool for micrographs and tomograms. :fa:`star,text-success` Allow multiple sessions when user login mode is enabled. :fa:`plus-square,text-primary` Sort classes in increasing order in Class View panel. :fa:`bug,text-danger` Fix issues when limiting total number of tasks in slurm scheduler. v0.5.2 (11/18/2023) ******************* :fa:`star,text-success` Add support for PACEtomo tilt-series in streaming Sessions. :fa:`plus-square,text-primary` Parallelize reconstruction step during 3D classification for faster speeds. :fa:`plus-square,text-primary` Add new options to flip maps in post-processing block. :fa:`plus-square,text-primary` Simplify installation instructions and setup process. :fa:`bug,text-danger` Fix issue with location of executables for neural network-based particle picking. :fa:`bug,text-danger` Fix issue with re-calculation of binned tomograms when reconstruction parameters change. :fa:`bug,text-danger` Fix issue with re-calculation of particle coordinates when no particles were found. :fa:`bug,text-danger` Correctly display particle size in tomography pre-processing block statistics. v0.5.1 (11/04/2023) ******************* :fa:`star,text-success` Import frame tilt-series data using mdoc files produced by PACEtomo. :fa:`plus-square,text-primary` Allow typing iteration number in navigation bar for refinement blocks. :fa:`plus-square,text-primary` Show refinement/bundle IDs in ``Per-particle Score`` and ``Exposure Weights`` tabs for refinement blocks. :fa:`bug,text-danger` Fix issue with display of tomograms with arbitrary thickness. :fa:`bug,text-danger` Fix broken CLI commands and update CLI tutorials. v0.5.0 (10/26/2023) ******************* This was the first release of nextPYP.